@article{doi:10.1098/rspb.2024.0090,
author = {van Dijk, Laura J. A. and Fisher, Brian L. and Miraldo, Andreia and Goodsell, Robert M. and Iwaszkiewicz-Eggebrecht, Elzbieta and Raharinjanahary, Dimby and Rajoelison, Eric Tsiriniaina and Łukasik, Piotr and Andersson, Anders F. and Ronquist, Fredrik and Roslin, Tomas and Tack, Ayco J. M. },
title = {Temperature and water availability drive insect seasonality across a temperate and a tropical region},
journal = {Proceedings of the Royal Society B: Biological Sciences},
volume = {291},
number = {2025},
pages = {20240090},
year = {2024},
doi = {10.1098/rspb.2024.0090},
url = {https://royalsocietypublishing.org/doi/abs/10.1098/rspb.2024.0090},
eprint = {https://royalsocietypublishing.org/doi/pdf/10.1098/rspb.2024.0090}
}
@article{doi:10.1098/rstb.2023.0118,
author = {Iwaszkiewicz-Eggebrecht, Ela and Zizka, Vera and Lynggaard, Christina },
title = {Three steps towards comparability and standardization among molecular methods for characterizing insect communities},
journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
volume = {379},
number = {1904},
pages = {20230118},
year = {2024},
doi = {10.1098/rstb.2023.0118},
url = {https://royalsocietypublishing.org/doi/abs/10.1098/rstb.2023.0118},
eprint = {https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2023.0118}
}
@article{10.1093/sysbio/syad054,
author = {Zhang, Chi and Ronquist, Fredrik and Stadler, Tanja},
title = {{Skyline Fossilized Birth–Death Model is Robust to Violations of Sampling Assumptions in Total-Evidence Dating}},
journal = {Systematic Biology},
volume = {72},
number = {6},
pages = {1316-1336},
year = {2023},
month = {08},
issn = {1063-5157},
doi = {10.1093/sysbio/syad054},
url = {https://doi.org/10.1093/sysbio/syad054},
eprint = {https://academic.oup.com/sysbio/article-pdf/72/6/1316/56917945/syad054.pdf}
}
@article{https://doi.org/10.1111/syen.12611,
author = {Hearn, Jack and Gobbo, Erik and Nieves-Aldrey, José Luis and Branca, Antoine and Nicholls, James A. and Koutsovoulos, Georgios and Lartillot, Nicolas and Stone, Graham N. and Ronquist, Fredrik},
title = {Phylogenomic analysis of protein-coding genes resolves complex gall wasp relationships},
journal = {Systematic Entomology},
volume = {49},
number = {1},
pages = {110-137},
doi = {https://doi.org/10.1111/syen.12611},
url = {https://resjournals.onlinelibrary.wiley.com/doi/abs/10.1111/syen.12611},
eprint = {https://resjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/syen.12611},
year = {2024}
}
@article{10.1371/journal.pone.0286272,
author = {Iwaszkiewicz-Eggebrecht, Elzbieta AND {\L}ukasik, Piotr AND Buczek, Mateusz AND Deng, Junchen AND Hartop, Emily A. AND Havn{\aa}s, Harald AND Prus-Frankowska, Monika AND Ugarph, Carina R. AND Viteri, Paulina AND Andersson, Anders F. AND Roslin, Tomas AND Tack, Ayco J. M. AND Ronquist, Fredrik AND Miraldo, Andreia},
date-added = {2023-09-13 13:24:29 +0200},
date-modified = {2023-09-13 13:24:48 +0200},
doi = {10.1371/journal.pone.0286272},
journal = {PLOS ONE},
month = {07},
number = {7},
pages = {1-13},
publisher = {Public Library of Science},
title = {FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples},
url = {https://doi.org/10.1371/journal.pone.0286272},
volume = {18},
year = {2023},
bdsk-url-1 = {https://doi.org/10.1371/journal.pone.0286272}
}
@article{10.1093/sysbio/syac033,
author = {Hartop, Emily and Srivathsan, Amrita and Ronquist, Fredrik and Meier, Rudolf},
date-added = {2023-09-13 13:24:29 +0200},
date-modified = {2023-09-13 13:25:22 +0200},
doi = {10.1093/sysbio/syac033},
eprint = {https://academic.oup.com/sysbio/article-pdf/71/6/1404/46465829/syac033.pdf},
issn = {1063-5157},
journal = {Systematic Biology},
month = {05},
number = {6},
pages = {1404-1422},
title = {{Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa}},
url = {https://doi.org/10.1093/sysbio/syac033},
volume = {71},
year = {2022},
bdsk-url-1 = {https://doi.org/10.1093/sysbio/syac033}
}
@article{10.1093/sysbio/syad045,
author = {Truszkowski, Jakub and Perrigo, Allison and Broman, David and Ronquist, Fredrik and Antonelli, Alexandre},
date-added = {2023-09-13 13:24:26 +0200},
date-modified = {2023-09-13 13:24:59 +0200},
doi = {10.1093/sysbio/syad045},
eprint = {https://academic.oup.com/sysbio/advance-article-pdf/doi/10.1093/sysbio/syad045/51305994/syad045.pdf},
issn = {1063-5157},
journal = {Systematic Biology},
month = {07},
pages = {syad045},
title = {{Online tree expansion could help solve the problem of scalability in Bayesian phylogenetics}},
url = {https://doi.org/10.1093/sysbio/syad045},
year = {2023},
bdsk-url-1 = {https://doi.org/10.1093/sysbio/syad045}
}
@inproceedings{10.1007/978-3-031-30044-8_20,
address = {Cham},
author = {Lund{\'e}n, Daniel and {\c{C}}aylak, Gizem and Ronquist, Fredrik and Broman, David},
booktitle = {Programming Languages and Systems},
date-added = {2023-09-13 13:24:26 +0200},
date-modified = {2023-09-13 13:25:14 +0200},
editor = {Wies, Thomas},
isbn = {978-3-031-30044-8},
pages = {535--563},
publisher = {Springer Nature Switzerland},
title = {Automatic Alignment in Higher-Order Probabilistic Programming Languages},
year = {2023}
}
@article{https://doi.org/10.1111/2041-210X.14073,
author = {Iwaszkiewicz-Eggebrecht, Elzbieta and Granqvist, Emma and Buczek, Mateusz and Prus, Monika and Kudlicka, Jan and Roslin, Tomas and Tack, Ayco J. M. and Andersson, Anders F. and Miraldo, Andreia and Ronquist, Fredrik and {\L}ukasik, Piotr},
date-added = {2023-09-13 13:19:43 +0200},
date-modified = {2023-09-13 13:24:15 +0200},
doi = {https://doi.org/10.1111/2041-210X.14073},
eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.14073},
journal = {Methods in Ecology and Evolution},
number = {4},
pages = {1130-1146},
title = {Optimizing insect metabarcoding using replicated mock communities},
url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.14073},
volume = {14},
year = {2023},
bdsk-url-1 = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.14073},
bdsk-url-2 = {https://doi.org/10.1111/2041-210X.14073}
}
@inproceedings{10.1007/978-3-030-99336-8_2,
address = {Cham},
author = {Lund{\'e}n, Daniel and {\"O}hman, Joey and Kudlicka, Jan and Senderov, Viktor and Ronquist, Fredrik and Broman, David},
booktitle = {Programming Languages and Systems},
date-added = {2022-05-05 10:17:27 +0200},
date-modified = {2022-05-05 11:00:29 +0200},
doi = {https://doi.org/10.1007/978-3-030-99336-8_2},
isbn = {978-3-030-99336-8},
pages = {29--56},
pdf = {https://link.springer.com/content/pdf/10.1007/978-3-030-99336-8.pdf},
publisher = {Springer International Publishing},
title = {Compiling Universal Probabilistic Programming Languages with Efficient Parallel Sequential Monte Carlo Inference},
url = {https://link.springer.com/chapter/10.1007/978-3-030-99336-8_2},
year = {2022},
bdsk-url-1 = {https://link.springer.com/chapter/10.1007/978-3-030-99336-8_2},
bdsk-url-2 = {https://doi.org/10.1007/978-3-030-99336-8_2}
}
@article{braga2021phylogenetic,
author = {Braga, Mariana P. and Janz, Niklas and Nylin, S{\"o}ren and Ronquist, Fredrik and Landis, Michael J.},
date-modified = {2022-05-05 10:20:47 +0200},
doi = {https://doi.org/10.1111/ele.13842},
journal = {Ecology Letters},
pages = {2134 --2145},
pdf = {https://www.onlinelibrary.wiley.com/doi/pdf/10.1111/ele.13842},
title = {Phylogenetic reconstruction of ancestral ecological networks through time for pierid butterflies and their host plants},
url = {https://www.onlinelibrary.wiley.com/doi/abs/10.1111/ele.13842},
volume = {24},
year = {2021},
bdsk-url-1 = {https://www.onlinelibrary.wiley.com/doi/abs/10.1111/ele.13842},
bdsk-url-2 = {https://doi.org/10.1111/ele.13842}
}
@article{valan2021awakening,
author = {Valan, Miroslav and Vondr\'{a}\v{c}ek, Dominik and Ronquist, Fredrik},
date-modified = {2022-05-05 10:21:12 +0200},
doi = {https://doi.org/10.1111/syen.12492},
journal = {Systematic Entomology},
pages = {757--766},
pdf = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/syen.12492},
title = {Awakening a taxonomist's third eye: exploring the utility of computer vision and deep learning in insect systematics},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/syen.12492},
volume = {46},
year = {2021},
bdsk-url-1 = {https://onlinelibrary.wiley.com/doi/abs/10.1111/syen.12492},
bdsk-url-2 = {https://doi.org/10.1111/syen.12492}
}
@phdthesis{Hartop1544804,
author = {Hartop, Emily},
institution = {Station Linni{\'e}},
isbn = {978-91-7911-473-2},
pages = {43},
pdf = {http://www.diva-portal.org/smash/get/diva2:1544804/FULLTEXT01.pdf},
publisher = {Department of Zoology, Stockholm University},
school = {Station Linn{\'e}},
title = {A multi-faceted approach to a "dark taxon" : The hyperdiverse and poorly known scuttle flies (Diptera: Phoridae)},
url = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-192276},
year = {2021},
bdsk-url-1 = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-192276}
}
@article{hartop2021large,
author = {Hartop, Emily and Srivathsan, Amrita and Ronquist, Fredrik and Meier, Rudolf},
doi = {10.1101/2021.04.13.439467},
journal = {bioRxiv},
pdf = {https://www.biorxiv.org/content/early/2021/05/09/2021.04.13.439467.full.pdf},
publisher = {Cold Spring Harbor Laboratory},
title = {{Large-scale Integrative Taxonomy (LIT): resolving the data conundrum for dark taxa}},
url = {https://www.biorxiv.org/content/early/2021/05/09/2021.04.13.439467},
year = {2021},
bdsk-url-1 = {https://www.biorxiv.org/content/early/2021/05/09/2021.04.13.439467},
bdsk-url-2 = {https://doi.org/10.1101/2021.04.13.439467}
}
@phdthesis{valan2021automated,
author = {Valan, Miroslav},
institution = {Stockholm University, Department of Zoology},
isbn = {978-91-7911-417-6},
pages = {66},
pdf = {http://www.diva-portal.org/smash/get/diva2:1522250/FULLTEXT01.pdf},
publisher = {Department of Zoology, Stockholm University},
school = {Stockholm University, Department of Zoology},
title = {Automated image-based taxon identification using deep learning and citizen-science contributions},
url = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-189460},
year = {2021},
bdsk-url-1 = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-189460}
}
@article{ronquist2021universal,
author = {Ronquist, Fredrik and Kudlicka, Jan and Senderov, Viktor and Borgstr{\"o}m, Johannes and Lartillot, Nicolas and Lund{\'e}n, Daniel and Murray, Lawrence D. and Sch{\"o}n, Thomas B. and Broman, David},
doi = {https://doi.org/10.1038/s42003-021-01753-7},
journal = {Communications Biology},
pages = {244},
pdf = {https://www.nature.com/articles/s42003-021-01753-7.pdf},
title = {Universal probabilistic programming offers a powerful approach to statistical phylogenetics},
url = {https://www.nature.com/articles/s42003-021-01753-7},
volume = {4},
year = {2021},
bdsk-url-1 = {https://www.nature.com/articles/s42003-021-01753-7},
bdsk-url-2 = {https://doi.org/10.1038/s42003-021-01753-7}
}
@article{arribas2021connecting,
author = {Arribas, Paula and And\'{u}jar, Carmelo and Bidartondo, Martin I. and Bohmann, Kristine and Coissac, \'{E}ric and Creer, Simon and deWaard, Jeremy R. and Elbrecht, Vasco and Ficetola, Gentile F. and Goberna, Marta and Kennedy, Susan and Krehenwinkel, Henrik and Leese, Florian and Novotny, Vojtech and Ronquist, Fredrik and Yu, Douglas W. and Zinger, Lucie and Creedy, Thomas J. and Meramveliotakis, Emmanouil and Noguerales, V\'{i}ctor and Overcast, Isaac and Morlon, H\'{e}l\`{e}ne and Vogler, Alfried P. and Papadopoulou, Anna and Emerson, Brent C.},
doi = {https://doi.org/10.1111/mec.15797},
journal = {Molecular Ecology},
pages = {1120--1135},
title = {Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis},
url = {https://onlinelibrary.wiley.com/doi/full/10.1111/mec.15797},
volume = {30},
year = {2021},
bdsk-url-1 = {https://onlinelibrary.wiley.com/doi/full/10.1111/mec.15797},
bdsk-url-2 = {https://doi.org/10.1111/mec.15797}
}
@article{hartop2021scuttling,
author = {Hartop, Emily and H{\"a}ggqvist, Sibylle and Ulefors, Sven Olof and Ronquist, Fredrik},
doi = {10.1111/syen.12448},
journal = {Systematic Entomology},
pages = {71--82},
publisher = {Blackwell Publishing Ltd Oxford, UK},
title = {{Scuttling towards monophyly: phylogeny of the mega-diverse genus \textit{Megaselia} (Diptera: Phoridae)}},
url = {http://doi.org/10.1111/syen.12448},
volume = {46},
year = {2021},
bdsk-url-1 = {http://doi.org/10.1111/syen.12448}
}
@article{marquina2021effect,
author = {Marquina, Daniel and Buczek, Mateusz and Ronquist, Fredrik and {\L}ukasik, Piotr},
doi = {10.7717/peerj.10799},
journal = {{PeerJ}},
pages = {e10799},
title = {The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies},
url = {https://doi.org/10.7717/peerj.10799},
volume = {9},
year = {2021},
bdsk-url-1 = {https://doi.org/10.7717/peerj.10799}
}
@article{braga2020bayesian,
author = {Braga, Mariana P and Landis, Michael J and Nylin, S{\"o}ren and Janz, Niklas and Ronquist, Fredrik},
doi = {10.1093/sysbio/syaa019},
journal = {Systematic Biology},
pages = {1149-1162},
title = {Bayesian inference of ancestral host-parasite interactions under a phylogenetic model of host repertoire evolution},
url = {https://doi.org/10.1093/sysbio/syaa019},
volume = {69},
year = {2020},
bdsk-url-1 = {https://doi.org/10.1093/sysbio/syaa019}
}
@article{ronquist2020completing,
author = {Ronquist, Fredrik and Forshage, Mattias and H{\"a}ggqvist, Sibylle and Karlsson, Dave and Hovm{\"o}ller, Rasmus and Bergsten, Johannes and Holston, Kevin and Britton, Tom and Abenius, Johan and Andersson, Bengt and others},
doi = {10.1371/journal.pone.0228561},
journal = {PLOS ONE},
number = {3},
pages = {e0228561},
publisher = {Public Library of Science San Francisco, CA USA},
title = {Completing {L}innaeus's inventory of the {S}wedish insect fauna: only 5,000 species left?},
url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0228561},
volume = {15},
year = {2020},
bdsk-url-1 = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0228561},
bdsk-url-2 = {https://doi.org/10.1371/journal.pone.0228561}
}
@inproceedings{kudlicka2020probabilistic,
author = {Kudlicka, Jan and Murray, Lawrence M and Ronquist, Fredrik and Sch{\"o}n, Thomas B},
booktitle = {Uncertainty in Artificial Intelligence},
organization = {PMLR},
pages = {679--689},
title = {Probabilistic programming for birth-death models of evolution using an alive particle filter with delayed sampling},
url = {http://auai.org/uai2019/proceedings/papers/235.pdf},
year = {2020},
bdsk-url-1 = {http://auai.org/uai2019/proceedings/papers/235.pdf}
}
@article{zhang2020using,
author = {Zhang, Chi and Huelsenbeck, John P and Ronquist, Fredrik},
doi = {10.1093/sysbio/syaa002},
journal = {Systematic Biology},
pages = {1016--1032},
title = {Using parsimony-guided tree proposals to accelerate convergence in {B}ayesian phylogenetic inference},
url = {https://doi.org/10.1093/sysbio/syaa002},
volume = {69},
year = {2020},
bdsk-url-1 = {https://doi.org/10.1093/sysbio/syaa002}
}
@article{karlsson2020data,
author = {Karlsson, Dave and Forshage, Mattias and Holston, Kevin and Ronquist, Fredrik},
doi = {10.3897/BDJ.8.e56286},
journal = {Biodiversity Data Journal},
pages = {e56286},
title = {{The data of the Swedish Malaise Trap Project, a countrywide inventory of Sweden's insect fauna}},
url = {https://doi.org/10.3897/BDJ.8.e56286},
volume = {8},
year = {2020},
bdsk-url-1 = {https://doi.org/10.3897/BDJ.8.e56286}
}
@article{karlsson2020swedish,
author = {Karlsson, Dave and Hartop, Emily and Forshage, Mattias and Jaschhof, Mathias and Ronquist, Fredrik},
doi = {10.3897/BDJ.8.e47255},
journal = {Biodiversity Data Journal},
pages = {e47255},
publisher = {Pensoft Publishers},
title = {{The Swedish Malaise trap project: a 15 year retrospective on a countrywide insect inventory}},
url = {https://doi.org/10.3897/BDJ.8.e47255},
volume = {8},
year = {2020},
bdsk-url-1 = {https://doi.org/10.3897/BDJ.8.e47255}
}
@phdthesis{marquina2020thesis,
author = {Marquina Hern\'{a}ndez, Daniel},
institution = {Stockholm University, Department of Zoology},
isbn = {978-91-7911-131-1},
pages = {40},
pdf = {http://www.diva-portal.org/smash/get/diva2:1417107/FULLTEXT01.pdf},
publisher = {Department of Zoology, Stockholm University},
school = {Stockholm University, Department of Zoology},
title = {Debugging metabarcoding for insect biodiversity studies},
url = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-180293},
year = {2020},
bdsk-url-1 = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-180293}
}
@article{ronquist2020probabilistic,
author = {Ronquist, Fredrik and Kudlicka, Jan and Senderov, Viktor and Borgstr{\"o}m, Johannes and Lartillot, Nicolas and Lund{\'e}n, Daniel and Murray, Lawrence and Sch{\"o}n, Thomas B. and Broman, David},
doi = {10.1101/2020.06.16.154443},
journal = {bioRxiv},
pdf = {https://www.biorxiv.org/content/early/2020/12/10/2020.06.16.154443.full.pdf},
publisher = {Cold Spring Harbor Laboratory},
title = {Universal probabilistic programming offers a powerful approach to statistical phylogenetics},
url = {https://www.biorxiv.org/content/early/2020/12/10/2020.06.16.154443},
year = {2020},
bdsk-url-1 = {https://www.biorxiv.org/content/early/2020/12/10/2020.06.16.154443},
bdsk-url-2 = {https://doi.org/10.1101/2020.06.16.154443}
}
@article{gobbo2020inquilines,
author = {Gobbo, Erik and Lartillot, Nicolas and Hearn, Jack and Stone, Graham N and Abe, Yoshihisa and Wheat, Christopher W and Ide, Tatsuya and Ronquist, Fredirik},
doi = {10.1093/gbe/evaa204},
journal = {Genome biology and evolution},
pages = {2060-2073},
publisher = {Oxford University Press},
title = {From Inquilines to Gall Inducers: Genomic Signature of a Life-style Transition in \textit{{S}ynergus} Gall Wasps},
url = {https://doi.org/10.1093/gbe/evaa204},
volume = {12},
year = {2020},
bdsk-url-1 = {https://doi.org/10.1093/gbe/evaa204}
}
@article{glockler2019dina,
author = {Gl{\"o}ckler, Falko and Macklin, James and Ronquist, Fredrik and Hoffmann, Jana},
doi = {https://doi.org/10.3897/biss.3.38059},
journal = {Biodiversity Information Science and Standards},
publisher = {Pensoft Publishers},
title = {{DINA: Open Source and Open Services-A modern approach for natural history collection management systems and research}},
url = {https://biss.pensoft.net/article/38059/list/9/},
year = {2019},
bdsk-url-1 = {https://biss.pensoft.net/article/38059/list/9/},
bdsk-url-2 = {https://doi.org/10.3897/biss.3.38059}
}
@article{marquina2019new,
author = {Marquina, Daniel and Andersson, Anders F and Ronquist, Fredrik},
doi = {https://doi.org/10.1111/1755-0998.12942},
journal = {Molecular Ecology Resources},
number = {1},
pages = {90--104},
title = {New mitochondrial primers for metabarcoding of insects, designed and evaluated using \textit{in silico} methods},
url = {https://doi.org/10.1111/1755-0998.12942},
volume = {19},
year = {2019},
bdsk-url-1 = {https://doi.org/10.1111/1755-0998.12942}
}
@article{marquina2019establishing,
author = {Marquina, Daniel and Esparza-Salas, Rodrigo and Roslin, Tomas and Ronquist, Fredrik},
doi = {10.1111/1755-0998.13071},
journal = {Molecular ecology resources},
number = {6},
pages = {1516--1530},
title = {Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from {M}alaise trap catches},
url = {https://doi.org/10.1111/1755-0998.13071},
volume = {19},
year = {2019},
bdsk-url-1 = {https://doi.org/10.1111/1755-0998.13071}
}
@article{valan2019automated,
author = {Valan, Miroslav and Makonyi, Karoly and Maki, Atsuto and Vondr\'{a}\v{c}ek, Dominik and Ronquist, Fredrik},
doi = {10.1093/sysbio/syz014},
journal = {Systematic Biology},
number = {6},
pages = {876--895},
publisher = {Oxford University Press},
title = {Automated taxonomic identification of insects with expert-level accuracy using effective feature transfer from convolutional networks},
url = {https://doi.org/10.1093/sysbio/syz014},
volume = {68},
year = {2019},
bdsk-url-1 = {https://doi.org/10.1093/sysbio/syz014}
}
@phdthesis{braga2019evolution,
author = {Braga, Mariana Pires},
institution = {Stockholm University, Department of Zoology},
isbn = {978-91-7797-569-4},
pages = {27},
pdf = {http://www.diva-portal.org/smash/get/diva2:1271841/FULLTEXT01.pdf},
publisher = {Department of Zoology, Stockholm University},
school = {Stockholm University, Department of Zoology},
title = {Evolution of host repertoires and the diversification of butterflies},
url = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-163179},
year = {2019},
bdsk-url-1 = {http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-163179}
}
@article{lunden2018automatic,
author = {Lund{\'e}n, Daniel and Broman, David and Ronquist, Fredrik and Murray, Lawrence M},
journal = {arXiv preprint arXiv:1812.07439},
title = {Automatic Alignment of Sequential {M}onte {C}arlo Inference in Higher-Order Probabilistic Programs},
url = {https://arxiv.org/abs/1812.07439},
year = {2018},
bdsk-url-1 = {https://arxiv.org/abs/1812.07439}
}
@article{macklin2018general,
author = {Macklin, James and Englund, Markus and Gl{\"o}ckler, Falko and Heikkinen, Mikko and Hoffmann, Jana and Newton, Keith and Ronquist, Fredrick},
doi = {https://doi.org/10.3897/biss.2.25646},
journal = {Biodiversity Information Science and Standards},
publisher = {Pensoft Publishers},
title = {General introduction to {DINA}},
url = {https://biss.pensoft.net/article/25646},
year = {2018},
bdsk-url-1 = {https://biss.pensoft.net/article/25646},
bdsk-url-2 = {https://doi.org/10.3897/biss.2.25646}
}
@article{ronquist2018life,
author = {Ronquist, Fredrik and Nylander, Johan and V{\aa}rdal, Hege and Nieves-Aldrey, Jos{\'e} Luis},
doi = {https://doi.org/10.3897/jhr.65.24115},
journal = {Journal of Hymenoptera Research},
pages = {91--110},
title = {Life history of \textit{{P}arnips} and the evolutionary origin of gall wasps},
url = {https://jhr.pensoft.net/articles.php?id=24115},
volume = {65},
year = {2018},
bdsk-url-1 = {https://jhr.pensoft.net/articles.php?id=24115},
bdsk-url-2 = {https://doi.org/10.3897/jhr.65.24115}
}
@article{hovmoller2017streckkodning,
author = {Hovm{\"o}ller, Rasmus and Forshage, Mattias and Ronquist, Fredrik},
journal = {PM fr{\aa}n Naturhistoriska riksmuseet 2017: 1. Naturhistoriska riksmuseets sm{\aa}skriftserie},
title = {Streckkodning av den svenska floran och faunan--f{\"o}ruts{\"a}ttningar och utmaningar},
url = {https://www.nrm.se/download/18.2a85cf3215e50a71056eac46/1511363009228/Streckkodningsrapport_slutversion_2017-11-21.pdf},
year = {2017},
bdsk-url-1 = {https://www.nrm.se/download/18.2a85cf3215e50a71056eac46/1511363009228/Streckkodningsrapport_slutversion_2017-11-21.pdf}
}
@article{macklin2017dina,
author = {Macklin, James and Gl{\"o}ckler, Falko and Hoffmann, Jana and Ronquist, Fredrik and Daume, Stefan and Haston, Elspeth},
doi = {https://doi.org/10.3897/tdwgproceedings.1.20216},
journal = {Biodiversity Information Science and Standards},
pdf = {https://biss.pensoft.net/article/20216/download/pdf/},
publisher = {Pensoft Publishers},
title = {{DINA: Open Source and Open Services-A Modern Approach for Sustainable Natural History Collection Management Systems}},
url = {https://biss.pensoft.net/article/20216/},
year = {2017},
bdsk-url-1 = {https://biss.pensoft.net/article/20216/},
bdsk-url-2 = {https://doi.org/10.3897/tdwgproceedings.1.20216}
}
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